I'm not sure I understand your post (punctuation might help!), but I think you are asking if you can install a manual transmission with an automatic console in a car with an "automatic" floor pan.
There are a couple of issues involved here.
First, the floor pan must be modified to accept a manual transmission shifter. You will need to cut the hole in the floor pan and add the "shift control cover" (or shifter "porch") which is available from any of the restoration suppliers like Ames or Performance Years. This part provides an opening and sealing surfaces for the shifter, the seal and the escutcheon.
You automatic console will not work with the 4 speed shifter. The manual transmission console has a different top plate and different cut-outs to accommodate the shifter.
You can also install a floor shifter using the shifter porch and a "non-console" trim plate and shifter boot without a console.
Hope that helps.
1968 Pontiac GTO
1983 Pontiac Bonneville (G) wagon
2008 Pontiac G8 base